Soumick Chatterjee
M. Sc. Soumick Chatterjee
2023
Book chapter
Liver segmentation in time-resolved C-arm CT volumes reconstructed from dynamic perfusion scans using time separation technique
Chatterjee, Soumick; Haseljić, Hana; Frysch, Robert; Kulvait, Vojtěch; Semshchikov, Vladimir; Hensen, Bennet; Wacker, Frank; Brüsch, Inga; Werncke, Thomas; Speck, Oliver; Nürnberger, Andreas; Rose, Georg
In: 2022 IEEE 5th International Image Processing, Applications and Systems Conference / IEEE International Conference on Image Processing Applications and Systems , 2022 - [Piscataway, NJ] : IEEE . - 2023, insges. 7 S.
Book chapter
Complex network for complex problems - a comparative study of CNN and Complex-valued CNN
Chatterjee, Soumick; Tummala, Pavan; Speck, Oliver; Nürnberger, Andreas
In: 2022 IEEE 5th International Image Processing, Applications and Systems Conference / IEEE International Conference on Image Processing Applications and Systems , 2022 - [Piscataway, NJ] : IEEE . - 2023, insges. 5 S.
Peer-reviewed journal article
MICDIR - multi-scale inverse-consistent deformable image registration using UNetMSS with self-constructing graph latent
Chatterjee, Soumick; Bajaj, Himanshi; Siddiquee, Istiyak H.; Subbarayappa, Nandish Bandi; Simon, Steve; Shashidhar, Suraj Bangalore; Speck, Oliver; Nürnberger, Andreas
In: Computerized medical imaging and graphics - Amsterdam [u.a.] : Elsevier Science, Bd. 108 (2023), Artikel 102267
Peer-reviewed journal article
Sinogram upsampling using Primal-Dual UNet for undersampled CT and radial MRI reconstruction
Ernst, Philipp; Chatterjee, Soumick; Rose, Georg; Speck, Oliver; Nürnberger, Andreas
In: Neural networks - Amsterdam : Elsevier, Bd. 166 (2023), S. 704-721
Peer-reviewed journal article
Liver segmentation using turbolift learning for CT and cone-beam C-arm perfusion imaging
Haseljić, Hana; Chatterjee, Soumick; Frysch, Robert; Kulvait, Vjtěch; Semshchikov, Vladimir; Hensen, Bennet; Wacker, Frank; Brüsch, Inga; Werncke, Thomas; Speck, Oliver; Nürnberger, Andreas; Rose, Georg
In: Computers in biology and medicine - Amsterdam [u.a.] : Elsevier Science, Bd. 154 (2023), Artikel 106539
Article in conference proceedings
Exploiting the inter-rater disagreement to improve probabilistic segmentation
Chatterjee, Soumick; Schulz, Franziska; Sciarra, Alexandro; Mattern, Hendrik; Janiga, Gábor; Speck, Oliver; Nürnberger, Andreas; Pathiraja, Sahani
In: Konferenz: ISMRM 2023, Toronto, Canada, June 2023, ResearchGATE - Cambridge, Mass. : ResearchGATE Corp. . - 2023, insges. 4 S.
Article in conference proceedings
Complex-valued fourier primal-dual - undersampled MRI reconstruction in hybrid-space
Chatterjee, Soumick; Ernst, Philipp; Speck, Oliver; Nürnberger, Andreas
In: Konferenz: ISMRM 2023, Toronto, Canada, June 2023, ResearchGATE - Cambridge, Mass. : ResearchGATE Corp. . - 2023, insges. 3 S.
Article in conference proceedings
Enhancing vessel continuity in deep learning based segmentation using maximum intensity projection as loss
Chatterjee, Soumick; Chintalapati, Karthikesh Varma; Radhakrishna, Chethan; Hudukula Ram Kumar, Sri Chandana; Sutrave, Raviteja; Mattern, Hendrik; Speck, Oliver; Nürnberger, Andreas
In: Konferenz: ISMRM 2023, Toronto, Canada, June 2023, ResearchGATE - Cambridge, Mass. : ResearchGATE Corp. . - 2023, insges. 4 S.
Non-peer-reviewed journal article
Voxel-wise classification for porosity investigation of additive manufactured parts with 3D unsupervised and (deeply) supervised neural networks
Iuso, Domenico; Chatterjee, Soumick; Cornelissen, Sven; Verhees, Dries; De Beenhouwer, Jan; Sijbers, Jan
In: De.arxiv.org - [S.l.] : Arxiv.org . - 2023, Artikel 2305.07894, insges. 40 S.
2022
Abstract
Improvement of magnetic resonance (MR) imaging-based temperature-controlled hyperthermia by reconstructing highly undersampled MR acquisition
Khatun, Rupali; Chatterjee, Soumick; Hader, Michael; Schmidt, Manfred; Bert, Christoph; Wadepohl, M.; Fietkau, Rainer; Ott, Oliver; Nürnberger, Andreas; Gaipl, Udo; Frey, Benjamin
In: 34th Annual Meeting European Society for Hyperthermic Oncology - ESHO, 2022 . - 2022, S. 73-74
Book chapter
Evaluation of deeply supervised neural networks for 3D pore segmentation in additive manufacturing
Iuso, Domenico; Chatterjee, Soumick; Heylen, Rob; Cornelissen, Sven; De Beenhouwer, Jan; Sijbers, Jan
In: Konferenz: SPIE Optical Engineering + Application, San Diego, California, United States, 21-26 August 2022, Proceedings of SPIE/ SPIE - Bellingham, Wash.: SPIE, Bd. 12242 (2022)
Peer-reviewed journal article
StRegA - unsupervised anomaly detection in brain MRIs using a compact context-encoding variational autoencoder
Chatterjee, Soumick; Sciarra, Alessandro; Dünnwald, Max; Tummala, Pavan; Agrawal, Shubham Kumar; Jauhari, Aishwarya; Kalra, Aman; Oeltze-Jafra, Steffen; Speck, Oliver; Nürnberger, Andreas
In: Computers in biology and medicine - Amsterdam [u.a.]: Elsevier Science, Bd. 149 (2022)
Peer-reviewed journal article
DS6, deformation-aware semi-supervised learning - application to small vessel segmentation with noisy training data
Chatterjee, Soumick; Prabhu, Kartik; Pattadkal, Mahantesh; Bortsova, Gerda; Sarasaen, Chompunuch; Dubost, Florian; Mattern, Hendrik; Bruijne, Marleen; Speck, Oliver; Nürnberger, Andreas
In: Journal of imaging - Basel : MDPI, Bd. 8 (2022), Heft 10, Artikel 259, insges. 22 S.
Peer-reviewed journal article
TorchEsegeta - framework for interpretability and explainability of image-based deep learning models
Chatterjee, Soumick; Das, Arnab; Mandal, Chirag; Mukhopadhyay, Budhaditya; Vipinraj, Manish; Shukla, Aniruddh; Nagaraja Rao, Rajatha; Sarasaen, Chompunuch; Speck, Oliver; Nürnberger, Andreas
In: Applied Sciences - Basel : MDPI, Bd. 12 (2022), Heft 4, Artikel 1834, insges. 20 S.
Peer-reviewed journal article
Classification of brain tumours in MR images using deep spatiospatial models
Chatterjee, Soumick; Nizamani, Faraz Ahmed; Nürnberger, Andreas; Speck, Oliver
In: Scientific reports - [London]: Macmillan Publishers Limited, part of Springer Nature, Bd. 12 (2022), insges. 11 S.
Peer-reviewed journal article
ReconResNet: Regularised residual learning for MR image reconstruction of undersampled cartesian and radial data
Chatterjee, Soumick; Breitkopf, Mario; Sarasaen, Chompunuch; Yassin, Hadya; Rose, Georg; Nürnberger, Andreas; Speck, Oliver
In: Computers in biology and medicine - Amsterdam [u.a.] : Elsevier Science, Bd. 143 (2022), Artikel 105321
Dissertation
Reducing artefacts in MRI using Deep Learning - enhancing automatic image processing pipelines
Chatterjee, Soumick; Nürnberger, Andreas; Speck, Oliver
In: Magdeburg, 2022, xxv, 360 Seiten, Illustrationen, Diagramme, 30 cm
Article in conference proceedings
Primal-Dual UNet for sparse view cone beam computed tomography volume reconstruction
Ernst, Philipp; Chatterjee, Soumick; Rose, Georg; Nürnberger, Andreas
In: Konferenz: Medical Imaging with Deep Learning (MIDL), Zürich, 2022, ResearchGATE - Cambridge, Mass.: ResearchGATE Corp. . - 2022, insges. 4 S.
Article in conference proceedings
Uncertainty quantification for ground-truth free evaluation of deep learning reconstructions
Chatterjee, Soumick; Sciarra, Alessandro; Dünnwald, Max; Talagini Ashoka, Anitha Bhat; Cheepinahalli Vasudeva, Mayura Gurjar; Saravanan, Shudarsan; Sambandham, Venkatesh Thirugnana; Oeltze-Jafra, Steffen; Speck, Oliver; Nürnberger, Andreas
In: Konferenz: ISMRM-ESMRMB 2022, ResearchGATE - Cambridge, Mass.: ResearchGATE Corp., 2010 . - 2022, insges. 4 S.
Article in conference proceedings
Multi-scale UNet with self-constructing graph latent for deformable image registration
Chatterjee, Soumick; Bajaj, Himanshi; Hossain Siddiquee, Mohammad Istiyak; Bandi Subbarayappa, Nandish; Simon, Steve; Shashidhar, Suraj; Speck, Oliver; Nürnberger, Andreas
In: Konferenz: ISMRM-ESMRMB 2022, ResearchGATE - Cambridge, Mass.: ResearchGATE Corp. . - 2022, insges. 4 S.
Article in conference proceedings
Motion-robust dynamic abdominal MRI using k-t GRASP and dynamic dual-channel training of super-resolution U-Net (DDoS-UNet)
Sarasaen, Chompunuch; Chatterjee, Soumick; Rose, Georg; Nürnberger, Andreas; Speck, Oliver
In: Konferenz: ISMRM-ESMRMB 2022, ResearchGATE - Cambridge, Mass. : ResearchGATE Corp. . - 2022, insges. 4 S.
Article in conference proceedings
Learning to segment brain tumours using an explainable classifier
Chatterjee, Soumick; Yassin, Hadya; Dubost, Florian; Nürnberger, Andreas; Speck, Oliver
In: Konferenz: ISMRM-ESMRMB 2022, ResearchGATE - Cambridge, Mass.: ResearchGATE Corp. . - 2022, insges. 4 S.
Article in conference proceedings
Automated SSIM regression for detection and quantification of motion artefacts in brain MR images
Sciarra, Alessandro; Chatterjee, Soumick; Dünnwald, Max; Placidi, Giuseppe; Nürnberger, Andreas; Speck, Oliver; Oeltze-Jafra, Steffen
In: Konferenz: Medical Imaging with Deep Learning (MIDL), Zürich, 2022, ResearchGATE - Cambridge, Mass.: ResearchGATE Corp., 2010 . - 2022, insges. 10 S.
Article in conference proceedings
DDoS-UNet - incorporating temporal information using dynamic dual-channel UNet for enhancing super-resolution of dynamic MRI
Chatterjee, Soumick; Serasaen, Chompunuch; Rose, Georg; Speck, Oliver; Nürnberger, Andreas
In: Konferenz: Medical Imaging with Deep Learning (MIDL), Zürich, 2022, ResearchGATE - Cambridge, Mass. : ResearchGATE Corp. . - 2022, insges. 4 S.
Article in conference proceedings
Reference-less SSIM Regression for Detection and Quantification of Motion Artefacts in Brain MRIs
Sciarra, Alessandro; Chatterjee, Soumick; Dünnwald, Max; Placidi, Giuseppe; Nürnberger, Andreas; Speck, Oliver; Oeltze-Jafra, Steffen
In: Konferenz: Medical Imaging with Deep Learning (MIDL), Zürich, 2022, ResearchGATE - Cambridge, Mass. : ResearchGATE Corp. . - 2022, insges. 4 S.
Non-peer-reviewed journal article
DDoS-UNet - incorporating temporal information using dynamic dual-channel UNet for enhancing super-resolution of dynamic MRI
Chatterjee, Soumick; Sarasaen, Chompunuch; Rose, Georg; Nürnberger, Andreas; Speck, Oliver
In: De.arxiv.org - [S.l.] : Arxiv.org . - 2022, Artikel 2202.05355, insges. 12 S.
Non-peer-reviewed journal article
Weakly-supervised segmentation using inherently-explainable classification models and their application to brain tumour classification
Chatterjee, Soumick; Yassin, Hadya; Dubost, Florian; Speck, Oliver; Nürnberger, Andreas
In: De.arxiv.org - [S.l.] : Arxiv.org . - 2022, Artikel 2206.05148, insges. 14 S.
Non-peer-reviewed journal article
MICDIR - multi-scale Inverse-consistent deformable image registration using UNetMSS with self-constructing graph latent
Chatterjee, Soumick; Bajaj, Himanshi; Siddiquee, Istiyak H.; Subbarayappa, Nandish Bandi; Simon, Steve; Shashidhar, Suraj Bangalore; Speck, Oliver; Nürnberger, Andreas
In: De.arxiv.org - [S.l.] : Arxiv.org . - 2022, Artikel 2203.04317, insges. 19 S.
Non-peer-reviewed journal article
Liver segmentation using turbolift learning for CT and cone-beam C-arm perfusion imaging
Haseljić, Hana; Chatterjee, Soumick; Frysch, Robert; Kulvait, Vojtěch; Semshchikov, Vladimir; Hensen, Bennet; Wacker, Frank; Brüsch, Inga; Werncke, Thomas; Speck, Oliver; Nürnberger, Andreas; Rose, Georg
In: De.arxiv.org - [S.l.] : Arxiv.org . - 2022, Artikel 2207.10167, insges. 16 S.
Non-peer-reviewed journal article
Automated SSIM regression for detection and quantification of motion artefacts in brain MR images
Sciarra, Alessandro; Chatterjee, Soumick; Dünnwald, Max; Placidi, Giuseppe; Nürnberger, Andreas; Speck, Oliver; Oeltze-Jafra, Steffen
In: De.arxiv.org - [S.l.]: Arxiv.org, 1991 . - 2022, insges. 9 S.
Non-peer-reviewed journal article
StRegA - unsupervised anomaly detection in brain MRIs using a compact context-encoding variational autoencoder
Chatterjee, Soumick; Sciarra, Alessandro; Dünnwald, Max; Tummala, Pavan; Agrawal, Shubham Kumar; Jauhari, Aishwarya; Kalra, Aman; Oeltze-Jafra, Steffen; Speck, Oliver; Nürnberger, Andreas
In: De.arxiv.org - [S.l.]: Arxiv.org, 1991 . - 2022, insges. 13 S.
2021
Abstract
DdoS - dynamic dual-channel U-Net for improving deep learning based super-resolution of abdominal dynamic MRI
Sarasaen, Chompunuch; Chatterjee, Soumick; Nürnberger, Andreas; Speck, Oliver
In: Magnetic resonance materials in physics, biology and medicine - Heidelberg : Springer, Bd. 34 (2021), Heft Suppl. 1, S. S44, Artikel S6.O3
Book chapter
Upgraded W-Net with attention gates and its application in unsupervised 3D liver segmentation
Mitta, Dhanunjaya; Chatterjee, Soumick; Speck, Oliver; Nürnberger, Andreas
In: Proceedings of the 10th International Conference on Pattern Recognition Applications and Methods. Volume 1: February 4-6, 2021 - [Setúbal]: SCITEPRESS - Science and Technology Publications, Lda.; Marsico, Maria . - 2021, S. 488-494
Book chapter
ShuffleUNet - super resolution of diffusion-weighted MRIs using deep learning
Chatterjee, Soumick; Sciarra, Alessandro; Dünnwald, Max; Mushunuri, Raghava Vinaykanth; Podishetti, Ranadheer; Rao, Rajatha Nagaraja; Gopinath, Geetha Doddapaneni; Oeltze-Jafra, Steffen; Speck, Oliver; Nürnberger, Andreas
In: 29th European Signal Processing Conference (EUSIPCO 2021) - [Piscataway, NJ]: IEEE . - 2021
Peer-reviewed journal article
CHAOS Challenge - combined (CT-MR) healthy abdominal organ segmentation
Kavur, A. Emre; Gezer, N. Sinem; Barış, Mustafa; Aslan, Sinem; Conze, Pierre-Henri; Groza, Vladimir; Pham, Duc Duy; Chatterjee, Soumick; Ernst, Philipp; Özkan, Savaş; Baydar, Bora; Lachinov, Dmitry; Han, Shuo; Pauli, Josef; Isensee, Fabian; Perkonigg, Matthias; Sathish, Rachana; Rajan, Ronnie; Sheet, Debdoot; Dovletov, Gurbandurdy; Speck, Oliver; Nürnberger, Andreas; Maier-Hein, Klaus H.; Bozdağı Akar, Gözde; Ünal, Gözde; Dicle, Oğuz; Selver, M. Alper
In: Medical image analysis - Amsterdam [u.a.]: Elsevier Science, Volume 69(2021), article 101950
Peer-reviewed journal article
Fine-tuning deep learning model parameters for improved super-resolution of dynamic MRI with prior-knowledge
Sarasaen, Chompunuch; Chatterjee, Soumick; Breitkopf, Mario; Rose, Georg; Nürnberger, Andreas; Speck, Oliver
In: Artificial intelligence in medicine - Amsterdam [u.a.] : Elsevier Science, Bd. 121 (2021), Artikel 102196
Article in conference proceedings
ReconResNet: regularised residual learning for MR image reconstruction of undersampled cartesian and radial data
Chatterjee, Soumick; Breitkopf, Mario; Sarasaen, Chompunuch; Yassin, Hadya; Rose, Georg; Nürnberger, Andreas; Speck, Oliver
In: Medical Imaging with Deep Learning - OpenReview.net . - 2021, insges. 3 S.
Article in conference proceedings
Interpretability techniques for deep learning based segmentation models
Chatterjee, Soumick; Das, Arnab; Mandal, Chirag; Mukhopadhyay, Budhaditya; Vipinraj Bhandari, Manish Bhandari; Shukla, Aniruddh; Speck, Oliver; Nürnberger, Andreas
In: Kongress: 2021 ISMRM & SMRT Annual Meeting & Exhibition, ResearchGATE - Cambridge, Mass.: ResearchGATE Corp. . - 2021
Article in conference proceedings
A comparative study of deep learning based deformable image registration techniques
Chatterjee, Soumick; Bajaj, Himanshi; Shashidhar, Suraj; Busnur Indushekar, Sanjeeth; Simon, Steve; Siddiquee, Istiyak; Nandish, B. S.; Speck, Oliver; Nürnberger, Andreas
In: Kongress: 2021 ISMRM & SMRT Annual Meeting & Exhibition, ResearchGATE - Cambridge, Mass.: ResearchGATE Corp. . - 2021
Article in conference proceedings
Fine-tuning deep learning model parameters for improved super-resolution of dynamic MRI with prior-knowledge
Sarasaen, Chompunuch; Chatterjee, Soumick; Saad, Fatima; Breitkopf, Mario; Nürnberger, Andreas; Speck, Oliver
In: Kongress: 2021 ISMRM & SMRT Annual Meeting & Exhibition, ResearchGATE - Cambridge, Mass.: ResearchGATE Corp. . - 2021
Article in conference proceedings
Unsupervised reconstruction based anomaly detection using a Variational Auto Encoder
Chatterjee, Soumick; Sciarra, Alessandro; Dünnwald, Max; Agrawal, Shubham; Tummala, Pavan; Setlur, Disha Kishore; Kalra, Aman; Jauhari, Aishwarya; Oeltze-Jafra, Steffen; Speck, Oliver; Nürnberger, Andreas
In: Kongress: 2021 ISMRM & SMRT Annual Meeting & Exhibition, ResearchGATE - Cambridge, Mass.: ResearchGATE Corp. . - 2021
Article in conference proceedings
Resolving to super resolution multi-dimensional diffusion imaging (Super-MUDI)
Nath, Vishwesh; Pizzolato, Marco; Palombo, Marco; Gyori, Noemi; Schilling, Kurt; Hansen, Colin; Yang, Qi; Kanakaraj, Praitayini; Landman, Bennett; Chatterjee, Soumick; Sciarra, Alessandro; Dünnwald, Max; Oeltze-Jafra, Steffen; Nürnberger, Andreas; Speck, Oliver; Pieciak, Tomasz; Baranek, Marcin; Bartocha, Kamil; Ciupek, Dominika; Bogusz, Fabian; Hamidinekoo, Azam; Afzali, Maryam; Lin, Harry; Alexander, Danny C.; Lan, Haoyu; Sepehrband, Farshid; Liang, Zifei; Wu, Tung-Yeh; Su, Ching-Wei; Wu, Qian-Hua; Liu, Zi-You; Chao, Yi-Ping; Albay, Enes; Unal, Gozde; Pylypenko, Dmytro; Ye, Xinyu; Zhang, Fan; Hutter, Jana
In: Kongress: 2021 ISMRM & SMRT Annual Meeting & Exhibition, ResearchGATE - Cambridge, Mass.: ResearchGATE Corp. . - 2021
Article in conference proceedings
Going beyond the image space - undersampled MRI reconstruction directly in the k-space using a complex valued residual neural network
Chatterjee, Soumick; Sarasaen, Chompunuch; Sciarra, Alessandro; Breitkopf, Mario; Oeltze-Jafra, Steffen; Nürnberger, Andreas; Speck, Oliver
In: Kongress: 2021 ISMRM & SMRT Annual Meeting & Exhibition, ResearchGATE - Cambridge, Mass.: ResearchGATE Corp. . - 2021
Article in conference proceedings
DS6, deformation-aware semi-supervised learning - application to small vessel segmentation with noisy training data
Chatterjee, Soumick; Prabhu, Kartik; Pattadkal, Mahantesh; Bortsova, Gerda; Sarasaen, Chompunuch; Dubost, Florian; Mattern, Hendrik; Bruijne, Marleen; Speck, Oliver; Nürnberger, Andreas
In: Konferenz: Medical Imaging with Deep Learning, MIDL 2021, Lübeck, Germany, 7. Juli 2021, Medical Imaging with Deep Learning - OpenReview.net . - 2021, insges. 3 S.
Non-peer-reviewed journal article
ReconResNet: regularised residual learning for MR image reconstruction of undersampled cartesian and radial data
Chatterjee, Soumick; Breitkopf, Mario; Sarasaen, Chompunuch; Yassin, Hadya; Podishetti, Ranadheer; Rose, Georg; Nürnberger, Andreas; Speck, Oliver
In: De.arxiv.org - [S.l.]: Arxiv.org . - 2021, S. 1-15
Non-peer-reviewed journal article
Sinogram upsampling using primal-dual UNet for undersampled CT and radial MRI reconstruction
Ernst, Philipp; Chatterjee, Soumick; Rose, Georg; Speck, Oliver; Nürnberger, Andreas
In: De.arxiv.org - [S.l.]: Arxiv.org . - 2021, insges. 20 S.
Non-peer-reviewed journal article
Classification of brain tumours in MR images using deep spatiospatial models
Chatterjee, Soumick; Nizamani, Faraz Ahmed; Nürnberger, Andreas; Speck, Oliver
In: De.arxiv.org - [S.l.]: Arxiv.org . - 2021, insges. 12 S.
Non-peer-reviewed journal article
TorchEsegeta - framework for interpretability and explainability of image-based deep learning models
Chatterjee, Soumick; Das, Arnab; Mandal, Chirag; Mukhopadhyay, Budhaditya; Vipinraj, Manish; Shukla, Aniruddh; Rao, Rajatha Nagaraja; Sarasaen, Chompunuch; Speck, Oliver; Nürnberger, Andreas
In: De.arxiv.org - [S.l.]: Arxiv.org . - 2021, insges. 15 S.
Non-peer-reviewed journal article
ShuffleUNet: super resolution of diffusion-weighted MRIs using deep learning
Chatterjee, Soumick; Sciarra, Alessandro; Dünnwald, Max; Mushunuri, Raghava Vinaykanth; Podishetti, Ranadheer; Rao, Rajatha Nagaraja; Gopinath, Geetha Doddapaneni; Oeltze-Jafra, Steffen; Speck, Oliver; Nürnberger, Andreas
In: De.arxiv.org - [S.l.] : Arxiv.org . - 2021, S. 1-5, Artikel 2102.12898
2020
Abstract
Contrast prediction-based regularization for iterative reconstructions (PROSIT)
Mattern, Hendrik; Sciarra, Alessandro; Dünnwald, Max; Chatterjee, Soumick; Müller, Ursula; Oeltze-Jafra, Steffen; Speck, Oliver
In: ISMRM 28th annual ISMRM virtual conference & exhibition, virtual, 08. - 14. August 2020, ISMRM 28th annual ISMRM virtual conference & exhibition, 08. - 14. August 2020 / ISMRM Annual Meeting & Exhibition , 2020 - 2020, Poster 3462
Article in conference proceedings
Unsupervised learning for Abdominal MRI Segmentation using 3D Attention W-Net
Mitta, Dhanunjaya; Chatterjee, Soumick; Speck, Oliver; Nürnberger, Andreas
In: Konferenz: ISMRM & SMRT Virtual Conference & Exhibition, 08-14 August 2020, ResearchGATE - Cambridge, Mass.: ResearchGATE Corp. . - 2020
Article in conference proceedings
Upgraded W-net with attention gates and its application in unsupervised 3D liver segmentation
Mitta, Dhanunjaya; Chatterjee, Soumick; Speck, Oliver; Nürnberger, Andreas
In: Konferenz: ICPRAM 2021, ResearchGATE - Cambridge, Mass.: ResearchGATE Corp. . - 2020
Article in conference proceedings
Retrospective motion correction of MR images using prior-assisted deep learning
Chatterjee, Soumick; Sciarra, Alessandro; Dünnwald, Max; Oeltze-Jafra, Steffen; Nürnberger, Andreas; Speck, Oliver
In: Konferenz: Medical Imaging Meets NeurIPS 2020, virtual, December 2020, ResearchGATE - Cambridge, Mass. : ResearchGATE Corp. - 2020, insgesamt 5 Seiten
Article in conference proceedings
Wavelet filtering of undersampled MRI using trainable wavelets and CNN
Chatterjee, Soumick; Putti, Praveen; Nürnberger, Andreas; Speck, Oliver
In: Kongress: ESMRMB 2020 Online Convergence Science & Education, September 30 - October 2, 2020, ResearchGATE - Cambridge, Mass.: ResearchGATE Corp. . - 2020
Article in conference proceedings
Super resolution of dynamic MRI using deep learning, enhanced by prior-knowledge
Sarasaen, Chompunuch; Chatterjee, Soumick; Nürnberger, Andreas; Speck, Oliver
In: Kongress: ESMRMB 2020 Online Convergence Science & Education, September 30 - October 2, 2020, ResearchGATE - Cambridge, Mass.: ResearchGATE Corp. . - 2020
Article in conference proceedings
Evaluation of deep learning techniques for motion artifacts removal
Sciarra, Alessandro; Chatterjee, Soumick; Dünnwald, Max; Speck, Oliver; Oeltze-Jafra, Steffen
In: Konferenz: ISMRM & SMRT Virtual Conference & Exhibition, 08-14 August 2020, ResearchGATE - Cambridge, Mass. : ResearchGATE Corp. . - 2020
Non-peer-reviewed journal article
CHAOS challenge - combined (CT-MR) healthy abdominal organ segmentation
Kavur, A. Emre; Gezer, N. Sinem; Barış, Mustafa; Aslan, Sinem; Conze, Pierre-Henri; Groza, Vladimir; Pham, Duc Duy; Chatterjee, Soumick; Ernst, Philipp; Özkan, Savaş; Baydar, Bora; Lachinov, Dmitry; Han, Shuo; Pauli, Josef; Isensee, Fabian; Perkonigg, Matthias; Sathish, Rachana; Rajan, Ronnie; Sheet, Debdoot; Dovletov, Gurbandurdy; Speck, Oliver; Nürnberger, Andreas; Maier-Hein, Klaus H.; Akar, Gözde Bozdağı; Ünal, Gözde; Dicle, Oğuz; Selver, M. Alper.
In: De.arxiv.org - [S.l.]: Arxiv.org, 2020, article 2001.06535, insgesamt 19 Seiten
Non-peer-reviewed journal article
Exploration of interpretability techniques for deep COVID-19 classification using chest X-ray images
Chatterjee, Soumick; Saad, Fatima; Sarasaen, Chompunuch; Ghosh, Suhita; Khatun, Rupali; Radeva, Petia; Rose, Georg; Stober, Sebastian; Speck, Oliver; Nürnberger, Andreas
In: De.arxiv.org - [S.l.]: Arxiv.org, 2020, article 2006.02570, insgesamt 16 Seiten
Non-peer-reviewed journal article
DS6: deformation-aware learning for small vessel segmentation with small, imperfectly labeled dataset
Chatterjee, Soumick; Prabhu, Kartik; Pattadkal, Mahantesh; Bortsova, Gerda; Dubost, Florian; Mattern, Hendrik; Bruijne, Marleen; Speck, Oliver; Nürnberger, Andreas
In: De.arxiv.org - [S.l.]: Arxiv.org, 2020, article 2006.10802, insgesamt 13Seiten
2019
Abstract
Generating breathing deformation model from low resolution 4D MRI
Sarasaen, Chompunuch; Chatterjee, Soumick; Breitkopf, Mario; Rose, Georg; Speck, Oliver
In: 4th Image-Guided Interventions Conference: digitalization in medicine : November 4th-5th 2019, UMM, Mannheim - Mannheim, 2019 . - 2019
Abstract
Comparison between the usage of same and different variable density undersampling patterns for Deep Learning based MRI Reconstruction
Chatterjee, Soumick; Breitkopf, Mario; Sarasaen, Chompunuch; Rose, Georg; Nürnberger, Andreas; Speck, Oliver
In: 4th Image-Guided Interventions Conference: digitalization in medicine : November 4th-5th 2019, UMM, Mannheim - Mannheim, 2019 . - 2019
Book chapter
Breathing deformation model - application to multi-resolution abdominal MRI
Sarasaen, Chompunuch; Chatterjee, Soumick; Breitkopf, Mario; Iuso, Domenico; Rose, Georg; Speck, Oliver
In: Konferenz: 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC, Berlin, Germany, 23-27 July 2019, 41st Annual International Conferences of the IEEE Engineering in Medicine and Biology Society (EMBC) - [Piscataway, NJ]: IEEE . - 2019
Book chapter
Breathing deformation model - application to multi-resolution abdominal MRI
Sarasaen, Chompunuch; Chatterjee, Soumick; Breitkopf, Mario; Iuso, Domenico; Rose, Georg; Speck, Oliver
In: Konferenz: 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC, Berlin, Germany, 23-27 July 2019, Biomedical engineering ranging from wellness to intensive care/ IEEE Engineering in Medicine and Biology Society - [Piscataway, NJ]: IEEE; Barbieri, Ricardo . - 2019, S. 2769-2772
Peer-reviewed journal article
Text classification using SVM enhanced by multithreading and CUDA
Chatterjee, Soumick; Jose, Pramod George; Datta, Debabrata
In: International journal of modern education and computer science - Hong Kong: MECS Press, Bd. 11.2019, 1, S. 11-23
Article in conference proceedings
CHAOS challenge - team OvGU MEMoRIAL
Ernst, Philipp; Chatterjee, Soumick; Speck, Oliver; Nürnberger, Andreas
In: Symposium: IEEE International Symposium on Biomedical Imaging (ISBI 2019), Venice, Italy, Apr 11, 2019, ResearchGATE - Cambridge, Mass.: ResearchGATE Corp. . - 2019
Article in conference proceedings
A deep learning approach for reconstruction of undersampled Cartesian and Radial data
Chatterjee, Soumick; Breitkopf, Mario; Sarasaen, Chompunuch; Rose, Georg; Nürnberger, Andreas; Speck, Oliver
In: Konferenz: ESMRMB 2019, Rotterdam, ResearchGATE - Cambridge, Mass.: ResearchGATE Corp. . - 2019
2018
Peer-reviewed journal article
Symmetric Key Encryption Algorithm Using Spider Web (ESP) Version-1
Mukhopadhyay, Aashijit; Chatterjee, Soumick; Nath, Asoke
In: International Journal of Latest Trends in Engineering and Technology Vol.(10)Issue(2), pp.342-346
Article in conference proceedings
Machine learning approach for segmenting glands in colon histology images using local intensity and texture features
Khatun, Rupali; Chatterjee, Soumick
In: Conference: IEEE 8th International Advance Computing Conference (IACC 2018)
2017
Peer-reviewed journal article
Duplicate File Analyzer using N-layer Hash and Hash Table
Mukherjee, Siladitya; Jose, Pramod Goerge; Chatterjee, Soumick; Basak, Priyanka
In: International Research Journal of Computer Science (IRJCS), Issue 06, Volume 4
Peer-reviewed journal article
Auto-Explore the Web Web Crawler
Chatterjee, Soumick; Nath, Asoke
In: International Journal of Innovative Research in Computer and Communication Engineering 5(4):6607-6618
2016
Book chapter
Microcontroller based automated life saviorMedisûr
Chatterjee, Soumick; Jose, Pramod George; Basak, Priyanka; Athar, Ambreen; Aravind, Bindhya; Beed, Romit S.; Biswas, Rana
In: Computational Science and Engineering, CRC Press, 2016, S. 329-332
Peer-reviewed journal article
Hash and Salt based Steganographic Approach with Modified LSB Encoding
Jose, Pramod Goerge; Chatterjee, Soumick; Patodia, Mayank; Kabra, Sneha; Nath, Asoke
In: International Journal of Innovative Research in Computer and Communication Engineering 4(6):10599-10610
Completed projects
Use of prior knowledge for interventional MRI (OvGU:ESF:MEMoRIAL M1-p4)
Duration: 01.01.2018 bis 30.06.2022
This project aims at the reconstruction of dynamic time series from almost acquisitions.
Typically, these are almost acquisitions of lower quality (eg wrt resolution, contrast, or artefacts) to slower scans with higher resolution; At the sametime we know that the object is primarily left apart from potential non-linear deformations and the presence of an interventional tool (eg a needle).
Consequently, a lot is known about the object.
This project aims to include available prior knowledge, and perfrom undersampled MR reconstruction using Deep Learning.
09/2022 | PhD dissertation defence: Reducing Artefacts in MRI Using Deep Learning: Enhancing Automatic Image Processing Pipelines |
07/2017 | Joined as a Research Associate at Infymax Solutions - Chatbot, Hospital Automation |
05/2017 | Master's Major Project: Text Classification using SVM enhanced by Multithreading and CUDA |
08/2015 | Commencement of Masters in Computer Science from St. Xavier's College Kolkata India |
11/2013 | Bachelor's Major Project: Data Hiding in Images - A steganographic approach |
12/2010 | Launch of Supernova Techlink - a software startup based in Kolkata, India - worked part-time during undergraduate study, followed by full-time as the co-founder and chief software architect |
08/2010 | Commencement of undergraduate study: Bachelor of Computer Application at Punjab Technical University India |